chore(ci): Update CI workflow

.github/workflows/main.yaml

@@ -20,16 +20,17 @@ jobs:
     steps:
       - uses: actions/checkout@v3
 
-      - uses: conda-incubator/setup-miniconda@v2
+      - uses: conda-incubator/setup-miniconda@v3
         with:
-          miniconda-version: "latest"
-          mamba-version: "1.*"
+          miniforge-version: latest
           environment-file: conda/dev.yaml
           channels: conda-forge,nodefaults
-          channel-priority: true
           activate-environment: pypkg
-          use-mamba: true
-          miniforge-variant: Mambaforge
+          auto-update-conda: true
+          conda-solver: libmamba
+
+      - name: Check poetry.lock
+        run: poetry check
 
       - name: Install dependencies
         run: poetry install
@@ -75,16 +76,14 @@ jobs:
     steps:
       - uses: actions/checkout@v3
 
-      - uses: conda-incubator/setup-miniconda@v2
+      - uses: conda-incubator/setup-miniconda@v3
         with:
-          miniconda-version: "latest"
-          mamba-version: "1.*"
+          miniforge-version: latest
           environment-file: conda/dev.yaml
           channels: conda-forge,nodefaults
-          channel-priority: true
           activate-environment: pypkg
-          use-mamba: true
-          miniforge-variant: Mambaforge
+          auto-update-conda: true
+          conda-solver: libmamba
 
       - name: Install dependencies
         run: poetry install

.github/workflows/release.yaml

@@ -20,16 +20,14 @@ jobs:
     steps:
       - uses: actions/checkout@v3
 
-      - uses: conda-incubator/setup-miniconda@v2
+      - uses: conda-incubator/setup-miniconda@v3
         with:
-          miniconda-version: "latest"
-          mamba-version: "1.*"
+          miniforge-version: latest
           environment-file: conda/dev.yaml
           channels: conda-forge,nodefaults
-          channel-priority: true
           activate-environment: pypkg
-          use-mamba: true
-          miniforge-variant: Mambaforge
+          auto-update-conda: true
+          conda-solver: libmamba
 
       - name: Install deps
         run: poetry install

conda/dev.yaml

@@ -10,4 +10,4 @@ dependencies:
   - compilers
   - pip
   - pip:
-    - makim==1.8.3
+    - makim==1.12.0

pyproject.toml

@@ -15,25 +15,25 @@ include = [
 "scicookie" = "scicookie.__main__:app"
 
 [tool.poetry.dependencies]
-python = ">=3.8.1,<3.12"
+python = ">=3.8.1,<4"
 cookieninja = "1.0.0"
-sh = "^2.0.4"
-colorama = "^0.4.6"
-inquirer = "^3.1.3"
+sh = ">=2.0.4"
+colorama = ">=0.4.6"
+inquirer = ">=3.1.3"
 pyyaml = ">=6.0.1"
 
 [tool.poetry.group.dev.dependencies]
 pytest = ">=7"
 pre-commit = ">=3"
-ruff = ">=0.1.5"
+ruff = ">=0.2.0"
 mypy = ">=1.5"
 pytest-cov = ">=3"
 pytest-cookies = ">=0.6.1"
 Sphinx = ">=4.4"
 jupyterlab = ">=3.5.1"
 jupyter-book = ">=0.12.3"
 myst-parser = ">=0.15"
-makim = "1.8.3"
+makim = "1.12.0"
 
 [build-system]
 requires = ["poetry-core>=1.0.0"]
@@ -75,10 +75,10 @@ select = [
   "I001", # isort
 ]
 
-[tool.ruff.pydocstyle]
+[tool.ruff.lint.pydocstyle]
 convention = "numpy"
 
-[tool.ruff.isort]
+[tool.ruff.lint.isort]
 # Use a single line between direct and from import
 lines-between-types = 1
 

src/scicookie/cli.py

@@ -43,7 +43,7 @@ def __init__(
 
 
 def _get_cookiecutter_default_answer(
-    answer_definition: Union[str, list]
+    answer_definition: Union[str, list],
 ) -> str:
     if not isinstance(answer_definition, (str, list)):
         SciCookieLogs.raise_error(

src/scicookie/profiles/base.yaml

@@ -78,7 +78,7 @@ project_layout:
   choices:
     - src
     - flat
-  visible: false
+  visible: true
 
 build_system:
   message: Select one option for the build system
@@ -96,7 +96,7 @@ build_system:
     - maturin
     - scikit-build-core
     - pybind11
-  visible: false
+  visible: true
 
 command_line_interface:
   message: Select one option for Command Line Interface (CLI)
@@ -108,7 +108,7 @@ command_line_interface:
     - None
     - Click
     - Argparse
-  visible: false
+  visible: true
 
 documentation_engine:
   message: Select one option for the Documentation Engine
@@ -120,14 +120,14 @@ documentation_engine:
     - mkdocs
     - sphinx
     - jupyter-book
-  visible: false
+  visible: true
 
 documentation_url:
   message: Type the documentation URL
   help: The URL for the documentation page.
   type: text
   default: "{{ project_url }}"
-  visible: false
+  visible: true
 
 use_tools:
   message: Select all the initial tools you want to add to your project
@@ -152,7 +152,7 @@ use_tools:
     - hypothesis
     - shellcheck
     - vulture
-  visible: false
+  visible: true
 
 use_containers:
   message: Select one option for the container technology for this project
@@ -164,7 +164,7 @@ use_containers:
     - None
     - Docker
     - Podman
-  visible: false
+  visible: true
 
 # doc_template:
 #   message: Select the template for the Documentation Engine
@@ -193,7 +193,7 @@ governance_document:
     - None
     - numpy-governance
     - sciml-governance
-  visible: false
+  visible: true
 
 roadmap_document:
   message: Select one option for a Roadmap document template
@@ -204,7 +204,7 @@ roadmap_document:
   choices:
     - None
     - pytorch-ignite-roadmap
-  visible: false
+  visible: true
 
 git_username:
   message: Type the GIT username

src/scicookie/{{cookiecutter.project_slug}}/build-system/base-pyproject.toml

@@ -66,6 +66,8 @@ src = ["./"]
 exclude = [
   'docs',
 ]
+
+[tool.ruff.lint]
 select = [
   "E",   # pycodestyle
   "F",   # pyflakes
@@ -76,10 +78,10 @@ select = [
 ]
 fixable = ["I001"]
 
-[tool.ruff.pydocstyle]
+[tool.ruff.lint.pydocstyle]
 convention = "numpy"
 
-[tool.ruff.isort]
+[tool.ruff.lint.isort]
 # Use a single line between direct and from import
 lines-between-types = 1
 {% endif %}

src/scicookie/{{cookiecutter.project_slug}}/build-system/flit-pyproject.toml

@@ -66,7 +66,7 @@ dependencies = [
     "blue >= 0.9.1",
 {% endif %}
 {%- if cookiecutter.use_black == "yes" -%}
-    "black >= 23.3.0",
+    "black >= 23.3.0,<23.10",
 {% endif %}
 {%- if cookiecutter.use_isort == "yes" -%}
     "isort >= 5.12.0",
@@ -78,10 +78,10 @@ dependencies = [
     "flake8 >= 4.0.1, < 7",
 {% endif %}
 {%- if cookiecutter.use_ruff == "yes" -%}
-    "ruff >= 0.0.278",
+    "ruff >= 0.2.0",
 {% endif %}
 {%- if cookiecutter.use_mypy == "yes" -%}
-    "mypy >= 1.3.0",
+    "mypy >= 1.5.0",
 {% endif %}
 {%- if cookiecutter.use_bandit == "yes" -%}
     "bandit >= 1.7.5",
@@ -123,7 +123,7 @@ dependencies = [
     "myst-parser >= 0.18.1",
 {% endif %}
 {%- if cookiecutter.use_makim == "yes" %}
-    "makim >=1.8.3",
+    "makim >=1.12.0",
 {% endif %}
 ]
 

src/scicookie/{{cookiecutter.project_slug}}/build-system/hatch-pyproject.toml

@@ -56,7 +56,7 @@ dependencies = [
     "blue >= 0.9.1",
 {% endif %}
 {%- if cookiecutter.use_black == "yes" -%}
-    "black >= 23.3.0",
+    "black >= 23.3.0,<23.10",
 {% endif %}
 {%- if cookiecutter.use_isort == "yes" -%}
     "isort >= 5.12.0",
@@ -68,10 +68,10 @@ dependencies = [
     "flake8 >= 4.0.1, < 7",
 {% endif %}
 {%- if cookiecutter.use_ruff == "yes" -%}
-    "ruff >= 0.0.278",
+    "ruff >= 0.2.0",
 {% endif %}
 {%- if cookiecutter.use_mypy == "yes" -%}
-    "mypy >= 1.3.0",
+    "mypy >= 1.5.0",
 {% endif %}
 {%- if cookiecutter.use_bandit == "yes" -%}
     "bandit >= 1.7.5",
@@ -111,7 +111,7 @@ dependencies = [
     "myst-parser >= 0.18.1",
 {% endif %}
 {%- if cookiecutter.use_makim == "yes" %}
-    "makim >=1.8.3",
+    "makim >=1.12.0",
 {% endif %}
 ]
 

src/scicookie/{{cookiecutter.project_slug}}/build-system/maturin-pyproject.toml

@@ -66,7 +66,7 @@ dependencies = [
     "blue>=0.9.1",
 {% endif %}
 {%- if cookiecutter.use_black == "yes" -%}
-    "black>=23.3.0",
+    "black>=23.3.0,<23.10",
 {% endif %}
 {%- if cookiecutter.use_isort == "yes" -%}
     "isort>=5.12.0",
@@ -78,10 +78,10 @@ dependencies = [
     "flake8>=4.0.1, <7",
 {% endif %}
 {%- if cookiecutter.use_ruff == "yes" -%}
-    "ruff>=0.0.278",
+    "ruff>=0.2.0",
 {% endif %}
 {%- if cookiecutter.use_mypy == "yes" -%}
-    "mypy>=1.3.0",
+    "mypy>=1.5.0",
 {% endif %}
 {%- if cookiecutter.use_bandit == "yes" -%}
     "bandit>=1.7.5",
@@ -123,7 +123,7 @@ dependencies = [
     "myst-parser>=0.18.1",
 {% endif %}
 {%- if cookiecutter.use_makim == "yes" %}
-    "makim >=1.8.3",
+    "makim >=1.12.0",
 {% endif %}
 ]
 

src/scicookie/{{cookiecutter.project_slug}}/build-system/mesonpy-pyproject.toml

@@ -66,7 +66,7 @@ dependencies = [
     "blue>=0.9.1",
 {% endif %}
 {%- if cookiecutter.use_black == "yes" -%}
-    "black>=23.3.0",
+    "black>=23.3.0,<23.10",
 {% endif %}
 {%- if cookiecutter.use_isort == "yes" -%}
     "isort>=5.12.0",
@@ -78,10 +78,10 @@ dependencies = [
     "flake8>=4.0.1, <7",
 {% endif %}
 {%- if cookiecutter.use_ruff == "yes" -%}
-    "ruff>=0.0.278",
+    "ruff>=0.2.0",
 {% endif %}
 {%- if cookiecutter.use_mypy == "yes" -%}
-    "mypy>=1.3.0",
+    "mypy>=1.5.0",
 {% endif %}
 {%- if cookiecutter.use_bandit == "yes" -%}
     "bandit>=1.7.5",
@@ -123,7 +123,7 @@ dependencies = [
     "myst-parser>=0.18.1",
 {% endif %}
 {%- if cookiecutter.use_makim == "yes" %}
-    "makim >=1.8.3",
+    "makim >=1.12.0",
 {% endif %}
 ]
 

src/scicookie/{{cookiecutter.project_slug}}/build-system/pdm-pyproject.toml

@@ -66,7 +66,7 @@ dependencies = [
     "blue>=0.9.1",
 {% endif %}
 {%- if cookiecutter.use_black == "yes" -%}
-    "black>=23.3.0",
+    "black>=23.3.0,<23.10",
 {% endif %}
 {%- if cookiecutter.use_isort == "yes" -%}
     "isort>=5.12.0",
@@ -78,10 +78,10 @@ dependencies = [
     "flake8>=4.0.1, <7",
 {% endif %}
 {%- if cookiecutter.use_ruff == "yes" -%}
-    "ruff>=0.0.278",
+    "ruff>=0.2.0",
 {% endif %}
 {%- if cookiecutter.use_mypy == "yes" -%}
-    "mypy>=1.3.0",
+    "mypy>=1.5.0",
 {% endif %}
 {%- if cookiecutter.use_bandit == "yes" -%}
     "bandit>=1.7.5",
@@ -123,7 +123,7 @@ dependencies = [
     "myst-parser>=0.18.1",
 {% endif %}
 {%- if cookiecutter.use_makim == "yes" %}
-    "makim >=1.8.3",
+    "makim >=1.12.0",
 {% endif %}
 ]