The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
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Updated
Jun 8, 2024 - MATLAB
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
Computational synthetic biology: Predicting DNA edits for bioengineering
Infer metabolic directions from moment differences of mass-weighted intensity distributions
Reinforcement Learning based bioretrosynthesis tool
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!
Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL
Toolkit for Modelling and Simulation of Gene Expressions and Metabolism
A Universal Modeling Language for Metabolic Flux Analysis
Genome-scale model of Yarrowia lipolytica.
Python wrapper for Retropath2.0 Knime workflow
Suite of tools that work on rpSBML format
Diversity-based enumeration of optimal context-specific metabolic networks
Library to perform metabolic engineering tasks
Context-sensitive creation of kinetic equations in biochemical networks
Enzymatic Link Prediction
Determination of product-growth-coupled strain designs employing stoichiometric metabolic models.
Impose constraints on enzyme abundances ratios in enzyme-constraint metabolic models
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