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Add optional command index and optional commands-by-group index.
Optionally, print fully-qualified subcommand name in title.
Support commands:command role for intersphinx.
Prefer fully-qualified HREF targets:
Use targets like "#blah-sub-commands" as the primary target and move historic targets like "#Sub-commands" to secondary targets.
Preserve the older HREF, "#sub-commands", as a secondary target. In the HTML, this becomes a span just below the section element so that bookmarks continue to work even after adopting the update from this commit.