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Add pandas-2.x
support in cudf
#14916
Commits on Feb 23, 2023
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Update value_counts with new behavior (#12835)
This PR updates value_counts behavior to match pandas-2.x, the result name will be count (or proportion if normalize=True is passed), and the index will be named after the original object name. This PR also fixes two dtype APIs that are breaking changes on pandas side.
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Commits on Feb 24, 2023
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Drop inplace parameter in categorical methods (#12846)
This PR drops `inplace` parameters in categorical methods, these are also removed as part of pandas-2.0
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[REVIEW] Raise error when
numeric_only=True
for non-numeric Series (#……12843) This PR raises an error when numeric_only=True for rank if the Series is of non-numeric dtype.
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Commits on Feb 25, 2023
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Commits on Feb 27, 2023
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Commits on Feb 28, 2023
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This PR drops support for `Series.is_monotonic` & `Index.is_monotonic`. Instead, the alternative will be `.is_monotonic_increasing`.
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Commits on Mar 6, 2023
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Commits on Mar 7, 2023
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Commits on Mar 8, 2023
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[REVIEW] Drop
datetime_is_numeric
parameter fromdescribe
(#12890)This PR removes support for `datetime_is_numeric` parameter in `describe`.
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Drop
names
,dtype
inIndex.copy
anddtype
,levels
,codes
……in `MultiIndex.copy` (#12898) This PR removes `dtype` in Index & `MultiIndex.copy`, and `names` in Index.copy
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Drop
kind
parameter fromIndex.get_slice_bound
(#12856)This PR drops `kind` parameter from `Index.get_slice_bound` to match pandas-2.0 API.
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Commits on Mar 9, 2023
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Commits on Mar 10, 2023
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[REVIEW] Update
numeric_only
behavior in reduction APIs (#12847)- [x] This PR removes the deprecation of `numeric_only=None` and defaults to `numeric_only=False`. - [x] Removes `level` parameter from reduction APIs to match pandas-2.0 - [x] Change `axis` defaults to match pandas-2.0 APIs.
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[REVIEW] Drop
DataFrame.append
andSeries.append
(#12839)This PR removes `DataFrame.append` & `Series.append` to match pandas-2.0 API. Test usages are now replaced with `.concat` API calls.
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Commits on Mar 13, 2023
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Drop
na_sentinel
fromfactorize
(#12924)This PR drops support for `na_sentinel` in factorize APIs, to match with pandas-2.0
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Merge remote-tracking branch 'upstream/pandas_2.0_feature_branch' int…
…o pandas_2.0_feature_branch
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Add information about
Index.is_*
method deprecation (#12909)This PR adds additional information for the following Index APIs to match with pandas 2.0: is_numeric is_boolean is_integer is_floating is_object is_categorical is_interval
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Commits on Mar 16, 2023
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Merge branch 'pandas_2.0_feature_branch' of https://github.com/rapids…
…ai/cudf into pandas_2.0_feature_branch
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Commits on Mar 28, 2023
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Commits on Mar 29, 2023
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Commits on Mar 31, 2023
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[REVIEW] Miscellaneous pytest fixes for pandas-2.0 (#12962)
This PR contains miscellaneous fixes in pytests. The changes in pytests are due to suttle changes in behaviors from the pandas-2.0 side.
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Commits on Apr 3, 2023
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Commits on Apr 4, 2023
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Commits on Apr 7, 2023
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Pandas 2.0 introduced support for ufuncs when the two columns are indexed. This PR updates the pytests accordingly.
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[REVIEW] datetime and timedelta improvements (#12934)
This PR fixes 1046 pytest failures that are related to `datetime64` & `timedelta64` types. This PR(`time_2.0`): ```bash = 990 failed, 86109 passed, 2034 skipped, 995 xfailed, 165 xpassed in 546.70s (0:09:06) = ``` on `pandas_2.0_feature_branch`: ```bash == 2036 failed, 85423 passed, 2034 skipped, 860 xfailed in 720.53s (0:12:00) === ```
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Fix MultiIndex construction in pandas 2.0 (#13092)
This PR removes a `MultiIndex` construction workaround that retains correct dtypes of each level. Thus fixing 19 pytests: ```bash = 907 failed, 86196 passed, 2034 skipped, 992 xfailed, 165 xpassed in 536.13s (0:08:56) = ``` On `pandas_2.0_feature_branch`: ```bash = 926 failed, 86177 passed, 2034 skipped, 992 xfailed, 165 xpassed in 545.17s (0:09:05) = ```
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Commits on Apr 11, 2023
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Commits on Apr 14, 2023
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[REVIEW] Enable
numeric_only
for row-wise ops (#13090)This PR enables numeric_only for row-wise ops to be on parity with pandas-2.0.
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Commits on Apr 15, 2023
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[REVIEW] Fix
DataFrame.__getitem__
to work withpandas-2.0
(#13139)This PR updates `DataFrame.__getitem__` to be able to work with pandas-2.0. For which, we conditionally pass `dtype` to `pandas.Series` constructor so that we don't get a warning in `<2.0` versions. This PR also fixes 76 pytests: ``` = 907 failed, 86353 passed, 2034 skipped, 992 xfailed, 165 xpassed in 504.93s (0:08:24) = ``` on `pandas_2.0_feature_branch`: ``` = 983 failed, 86277 passed, 2034 skipped, 992 xfailed, 165 xpassed in 515.47s (0:08:35) = ```
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Commits on Apr 17, 2023
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Commits on Apr 18, 2023
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Drop backfill and pad in GroupBy (#13156)
This PR drops support for `pad` and `backfill` in `GroupBy`. This PR: ``` = 881 failed, 86383 passed, 2034 skipped, 956 xfailed, 165 xpassed in 522.05s (0:08:42) = ``` On `pandas_2.0_feature_branch`: ``` = 911 failed, 86389 passed, 2034 skipped, 956 xfailed, 165 xpassed in 521.12s (0:08:41) = ```
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[REVIEW] Add
no_default
and adaptSeries.reset_index
to different……iate `None` for `name` parameter (#13152) In `pandas-2.0` the behavior for `name` parameter has changed to actually name a column `0` if no value is passed to `name`. But if `name=None`, the column will be named `None` too: ```python In [1]: import pandas as pd In [2]: s = pd.Series([10, 11, 23], index=[2, 3, 5]) In [3]: s Out[3]: 2 10 3 11 5 23 dtype: int64 In [4]: s.reset_index() Out[4]: index 0 0 2 10 1 3 11 2 5 23 In [5]: s.reset_index(name=None) Out[5]: index None 0 2 10 1 3 11 2 5 23 ``` To achieve the same behavior in `cudf`, we had to introduce `no_default` value(which is same as pandas's `no_default` value). This also fixes 18 pytests: ``` = 965 failed, 86325 passed, 2044 skipped, 992 xfailed, 165 xpassed in 508.32s (0:08:28) = ``` On `pandas_2.0_feature_branch`: ``` = 983 failed, 86277 passed, 2034 skipped, 992 xfailed, 165 xpassed in 541.87s (0:09:01) = ```
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Fix
is_string_dtype
to adapt topandas-2.0
changes (#13141)With `pandas-2.0`, `pd.api.types.is_string_dtype(obj)` is going to perform a data-introspection to determine the true dtype of the underlying data. This path won't work for gpu objects, hence this PR adds special handling for GPU objects before we hit `pd.api.types.is_string_dtype(obj)` API. This PR fixes 56 pytests: ``` = 927 failed, 86333 passed, 2034 skipped, 992 xfailed, 165 xpassed in 506.69s (0:08:26) = ``` On `pandas_2.0_feature_branch`: ``` = 983 failed, 86277 passed, 2034 skipped, 992 xfailed, 165 xpassed in 557.07s (0:09:17) = ```
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Commits on Apr 19, 2023
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Handle pandas warnings for pad and backfill (#13168)
This PR adds pytest handling for wanring incase of pad and backfill.
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[REVIEW] Fix datetime pytests & raise errors for timezone un-aware ty…
…pecasting (#13164) This PR fixes some of the `to_datetime` related pytests and also raises error while constructing a time-zone un-aware type to datetime types. This PR fixes 62 pytests: ``` = 745 failed, 87877 passed, 2044 skipped, 956 xfailed, 165 xpassed in 492.06s (0:08:12) = ``` On `pandas_2.0_feature_branch`: ``` = 807 failed, 87819 passed, 2044 skipped, 956 xfailed, 165 xpassed in 488.43s (0:08:08) = ```
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Merge remote-tracking branch 'upstream/pandas_2.0_feature_branch' int…
…o pandas_2.0_feature_branch
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[REVIEW] Fix pytests where empty column indexes are compared (#13166)
This PR fixes pytests where empty column object comparisons fail, this is because of the following inconsistency between pandas & cudf: ```python In [1]: import pandas as pd In [2]: import cudf In [3]: pd.DataFrame().columns Out[3]: RangeIndex(start=0, stop=0, step=1) In [4]: cudf.DataFrame().columns Out[4]: Index([], dtype='object') In [5]: pd.DataFrame().columns.dtype Out[5]: dtype('int64') In [6]: cudf.DataFrame().columns.dtype Out[6]: dtype('O') ``` This PR fixes 28 failures: ``` = 779 failed, 87847 passed, 2044 skipped, 956 xfailed, 165 xpassed in 483.17s (0:08:03) = ``` On `pandas_2.0_feature_branch`: ``` = 807 failed, 87819 passed, 2044 skipped, 956 xfailed, 165 xpassed in 488.43s (0:08:08) = ```
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[REVIEW] Raise error when there is a binary operation between certain…
… `DataFrame` and `Series` objects (#13138) This PR raises an error when there is a binary operation performed between `DataFrame` & `Series` with unequal `columns` and `index` respectively. This PR fixes 120 pytests: ``` = 833 failed, 86451 passed, 2034 skipped, 968 xfailed, 165 xpassed in 490.86s (0:08:10) = ``` on `pandas_2.0_feature_branch`: ``` = 953 failed, 86307 passed, 2034 skipped, 992 xfailed, 165 xpassed in 511.09s (0:08:31) = ```
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Merge remote-tracking branch 'upstream/pandas_2.0_feature_branch' int…
…o pandas_2.0_feature_branch
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Commits on Apr 20, 2023
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Fix
datetime64
related inconsistencies in pytests (#13175)This PR fixes `datetime64` related pytest failures where pandas returns `ns` time resolutions for quite a lot of cases, i.e., mostly on the IO APIs side. Fixes 72 pytests: ``` = 484 failed, 88162 passed, 2044 skipped, 932 xfailed, 165 xpassed in 444.53s (0:07:24) = ``` On `pandas_2.0_feature_branch`: ``` = 556 failed, 88090 passed, 2044 skipped, 932 xfailed, 165 xpassed in 456.49s (0:07:36) = ```
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Fix
DataFrame.describe
pytests (#13191)#12890 dropped support for `datetime_is_numeric` from `describe` API. This PR cleans-up a remaining pytest that was using this parameter. This PR fixes 20 pytests: ``` = 464 failed, 88182 passed, 2044 skipped, 932 xfailed, 165 xpassed in 440.68s (0:07:20) = ``` On `pandas_2.0_feature_branch`: ``` = 484 failed, 88162 passed, 2044 skipped, 932 xfailed, 165 xpassed in 457.87s (0:07:37) = ```
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Commits on Apr 21, 2023
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Change default
dtype
forget_dummies
tobool
(#13174)This PR changes the default dtype for get_dummies to bool from uint8 to match pandas-2.0: pandas-dev/pandas#48022
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[REVIEW] Update parameter ordering in
DataFrame.pivot
(#13190)This PR updates parameter ordering in `DataFrame.pivot` to match pandas-2.0. This PR fixes 7 related pytests: ``` = 477 failed, 88169 passed, 2044 skipped, 932 xfailed, 165 xpassed in 438.55s (0:07:18) = ``` On `pandas_2.0_feature_branch`: ``` = 484 failed, 88162 passed, 2044 skipped, 932 xfailed, 165 xpassed in 457.87s (0:07:37) = ```
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Commits on Apr 26, 2023
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Fix ceil, floor and round pytests (#13218)
A fix for pandas-dev/pandas#52761 has been merged by @mroeschke , this PR xfails the pytests conditionally for `2.0.0` and passes for rest of the versions. This PR fixes 27 pytests: ``` = 404 failed, 88221 passed, 2044 skipped, 959 xfailed, 165 xpassed in 442.21s (0:07:22) = ``` On `pandas_2.0_feature_branch`: ``` = 431 failed, 88221 passed, 2044 skipped, 932 xfailed, 165 xpassed in 456.25s (0:07:36) = ```
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Fix
kurtosis
pytests to supportnumeric_only
parameter (#13217)#12847 introduced support for `numeric_only`, this PR cleans up a `kurt` related pytest that was relying on the old behavior. This PR fixes 18 pytests : ``` = 413 failed, 88257 passed, 2044 skipped, 932 xfailed, 165 xpassed in 463.03s (0:07:43) = ``` On `pandas_2.0_feature_branch`: ``` = 431 failed, 88221 passed, 2044 skipped, 932 xfailed, 165 xpassed in 456.25s (0:07:36) = ```
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Fix parquet pytests errors with pandas-2.0 (#13216)
Pandas-2.0 fixed the following issue where dtype of the column was being changed even when `np.nan` was not being written to it: ```python In [1]: import pandas as pd In [2]: df = pd.DataFrame({'a':[1, 2, 3]}) In [3]: df.dtypes Out[3]: a int64 dtype: object In [4]: df Out[4]: a 0 1 1 2 2 3 In [7]: df[[False]*3] = np.nan In [8]: df Out[8]: a 0 1 1 2 2 3 In [9]: df.dtypes Out[9]: a int64 dtype: object ``` Bug in pre-2.0: ```python In [1]: import pandas as pd In [2]: df = pd.DataFrame({'a':[1, 2, 3]}) In [3]: df.dtypes Out[3]: a int64 dtype: object In [4]: df Out[4]: a 0 1 1 2 2 3 In [7]: df[[False]*3] = np.nan In [8]: df Out[8]: a 0 1.0 1 2.0 2 3.0 In [9]: df.dtypes Out[9]: a float64 dtype: object ``` `make_pdf` was basically operating correctly with the help of this bug, this PR makes some fixes to the method and the callers to preserve the pytest behaviors. This PR fixes 6 pytests: ``` = 425 failed, 88227 passed, 2044 skipped, 932 xfailed, 165 xpassed in 471.32s (0:07:51) = ``` On `pandas_2.0_feature_branch`: ``` = 431 failed, 88221 passed, 2044 skipped, 932 xfailed, 165 xpassed in 456.25s (0:07:36) = ```
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Fix csv reader pytest & MultiIndex docstring (#13417)
Pandas-2.0 moved to a very strict & consistent date format inference, we should plan to move similarly but meanwhile for the pytest to pass, we will need to pass date_format='mixed'. This PR also fixes a miscellaneous issue with MultiIndex.copy docstring.
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Commits on May 26, 2023
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Deprecate
Groupby.dtypes
(#13453)This PR deprecates `Groupby.dtypes` since it is deprecated in `pandas-2.1` This PR fixes 5 pytests: ``` = 474 failed, 95510 passed, 2044 skipped, 763 xfailed, 300 xpassed in 459.93s (0:07:39) = ``` On `pandas_2.0_feature_branch`: ``` = 479 failed, 95505 passed, 2044 skipped, 763 xfailed, 300 xpassed in 471.66s (0:07:51) = ```
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Enforce Groupby.__iter__ deprecation and miscellaneous pytest fixes (#…
…13423) This PR: - [x] Enforces deprecation in `GroupBy.__iter__` - [x] Fixes miscellaneous pytest failures due to already existing differences in cudf vs pandas & nuly introduced `inferred_type` in Index.
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Preserve Index and grouped columns in
Groupby.nth
(#13442)In pandas-2.0 `groupby.nth` behavior has changed: https://pandas.pydata.org/docs/whatsnew/v2.0.0.html#dataframegroupby-nth-and-seriesgroupby-nth-now-behave-as-filtrations This PR enables preserving the callers index in the end result and returns grouping columns as part of the result. This PR fixes all 12 pytests in `python/cudf/cudf/tests/test_groupby.py::test_groupby_nth`
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Index
class deprecation enforcements (#13204)This PR: - [x] Enforces `Index` related deprecations by removing `Float32Index`, `Float64Index`, `GenericIndex`, `Int8Index`, `Int16Index`, `Int32Index`, `Int64Index`, `StringIndex`, `UInt8Index`, `UInt16Index`, `UInt32Index`, `UInt64Index`. - [x] Cleans up the repr logic to more closely align with pandas for `<NA>` value representation incase of `string` dtype. - [x] Fixes docstring and pytests to support the removals of the above classes. This PR also fixes 202 pytests: ```bash = 267 failed, 95670 passed, 2044 skipped, 763 xfailed, 300 xpassed in 442.18s (0:07:22) = ``` On `pandas_2.0_feature_branch`: ```bash = 469 failed, 95464 passed, 2044 skipped, 763 xfailed, 300 xpassed in 469.26s (0:07:49) = ```
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Fix parquet paritioning pytest failures (#13474)
This PR fixes parquet pytest failures, mostly working around two upstream issues: 1. pandas-dev/pandas#53345 2. apache/arrow#33321 Thus fixes 20 pytest failure: This PR: ``` = 231 failed, 95767 passed, 2045 skipped, 764 xfailed, 300 xpassed in 426.65s (0:07:06) = ``` On `pandas_2.0_feature_branch`: ``` = 251 failed, 95747 passed, 2045 skipped, 764 xfailed, 300 xpassed in 433.50s (0:07:13) = ```
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Enforce merge validation deprecation (#13499)
This PR raises an error when a merge is being performed between data consisting of different levels.
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Enable
sort=True
forIndex.union
,Index.difference
and `Index.i……ntersection` (#13497) This PR enables `sort=True` for `union`, `difference`, and `intersection` APIs in `Index`. This also fixes 1 pytest failure and adds 77 pytests: On `Index_sort_2.0`: ``` = 230 failed, 95836 passed, 2045 skipped, 768 xfailed, 308 xpassed in 438.88s (0:07:18) = ``` On `pandas_2.0_feature_branch`: ``` = 231 failed, 95767 passed, 2045 skipped, 764 xfailed, 300 xpassed in 432.59s (0:07:12) = ``` xref: pandas-dev/pandas#25151
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Fix a groupby pytest related to numeric_only (#13496)
This PR fixes a groupby pytest by performing a special version based handling, we will need this handling because of no support for numeric_only in groupby.agg yet.
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Drop special handling of
min_periods
forRolling.count
(#13483)This PR drops a special handling for `Rolling.count` where we always default to `min_periods=0`, this is an inconsistency that pandas-2.0 resolves in: pandas-dev/pandas#48839 This PR fixes 2 pytest failures: ``` = 229 failed, 95769 passed, 2045 skipped, 764 xfailed, 300 xpassed in 458.04s (0:07:38) = ``` On `pandas_2.0_feature_branch`: ``` = 231 failed, 95767 passed, 2045 skipped, 764 xfailed, 300 xpassed in 457.58s (0:07:37) = ```
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This PR fixes 3 json reader pytests: This PR: ``` = 228 failed, 95770 passed, 2045 skipped, 764 xfailed, 300 xpassed in 473.29s (0:07:53) = ``` On `pandas_2.0_feature_branch`: ``` = 231 failed, 95767 passed, 2045 skipped, 764 xfailed, 300 xpassed in 445.90s (0:07:25) = ```
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Fix
DataFrame.mode
pytest (#13500)This PR xfails a condition that is failing due to a pandas bug: pandas-dev/pandas#53497
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Merge remote-tracking branch 'upstream/pandas_2.0_feature_branch' int…
…o get_indexer_2.0
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Fix
dask_cudf
pytest failures forpandas-2.0
upgrade (#13548)This PR fixes all `dask_cudf` side failures that happen due to `pandas-2.0` upgrade. The fixes are trivial to be broken down into separate PRs. - [x] `check_less_precise` is removed in `pandas-2.0`, since it is a parameter that we never supported and just had it for the sake of matching signature I removed it from all the methods. - [x] Due to the removal of `StringIndex`, we had to perform some re-ordering of `if/elif` logic in `_nonempty_index`. - [x] `dask_cudf.DataFrame.var` got `numeric_only` support. - [x] `Series.count` doesn't have `skipna` support. Hence removed it from the call. This PR fixes 56 pytest failures: ``` == 1100 passed, 13 skipped, 8 xfailed, 5 xpassed, 114 warnings in 57.10s == ``` On `pandas_2.0_feature_branch`: ``` == 56 failed, 1044 passed, 13 skipped, 8 xfailed, 5 xpassed, 114 warnings in 73.73s (0:01:13) == ```
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Enable writing column names with mixed dtype in parquet writer when `…
…mode.pandas_compatible=True` (#13505) This PR enables writing a dataframe that has column names that are of mixed types to a parquet file when pandas compatibility mode is enabled(`mode.pandas_compatible=True`). --------- Co-authored-by: Bradley Dice <bdice@bradleydice.com>
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Merge remote-tracking branch 'upstream/pandas_2.0_feature_branch' int…
…o get_indexer_2.0
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Merge pull request #13234 from galipremsagar/get_indexer_2.0
Resolves: #12312 This PR: - Enforces Index.get_loc deprecation by removing method and tolerance parameter support. - Introduces Index.get_indexer to match pandas: https://pandas.pydata.org/docs/reference/api/pandas.Index.get_indexer.html This PR fixes 219 pytests & adds 100 pytests: ``` = 32 failed, 96054 passed, 2045 skipped, 766 xfailed, 300 xpassed in 409.82s (0:06:49) = ``` On `pandas_2.0_feature_branch`: ``` = 251 failed, 95747 passed, 2045 skipped, 764 xfailed, 300 xpassed in 433.50s (0:07:13) = ```
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Fix default behavior of index metaclass instance and subclass checks #…
…13787 The current implementation of IndexMeta gives the wrong result for subclasses of Index: for instance, DatetimeIndex.__instancecheck__(DatetimeIndex(), DatetimeIndex) or DatetimeIndex.__subclasscheck__(DatetimeIndex, DatetimeIndex) would return False. In the case of isinstance, however, we have been saved by https://bugs.python.org/issue35083, wherein Python is silently injecting a if type(instance) is self: return True short-circuit. issubclass currently does have the wrong behavior, though. The fix is to fall back to the original behavior of isinstance/issubclass rather than hardcoding a boolean result. That will also ensure that we get the correct behavior if e.g. a subclass of Index is itself subclassed, e.g. if we introduced a class SpecialDatetimeIndex(DatetimeIndex).
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Merge branch 'pandas_2.0_feature_branch' of https://github.com/rapids…
…ai/cudf into pandas_2.0_feature_branch
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Deprecate
is_categorical_dtype
(#14274)This PR deprecates `is_categorical_dtype` to match pandas-dev/pandas#52527 which was introduced in `pandas-2.x`. This PR internalizes the public API since this is a needed utility in our code base. This PR: ``` = 23835 failed, 5698 passed, 1613 skipped, 288 xfailed, 423 errors in 1976.84s (0:32:56) = ``` On `pandas_2.0_feature_branch`: ``` = 24297 failed, 5115 passed, 1613 skipped, 288 xfailed, 480 errors in 1980.46s (0:33:00) = ```
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Deprecate is_interval_dtype and is_datetime64tz_dtype (#14275)
This PR deprecates `is_datetime64tz_dtype` and `is_interval_dtype` to have parity with pandas-2.x: pandas-dev/pandas#52607, alternatively this PR internalizes these utilities. This PR: ``` = 1584 failed, 98570 passed, 2069 skipped, 776 xfailed, 312 xpassed, 20 errors in 737.24s (0:12:17) = ``` On `pandas_2.0_feature_branch`: ``` = 23835 failed, 5698 passed, 1613 skipped, 288 xfailed, 423 errors in 1976.84s (0:32:56) = ```
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Deprecate
method
infillna
API (#14278)This PR deprecates `method` parameter in all public `fillna` APIs to match pandas: pandas-dev/pandas#53496 This PR: ``` = 1056 failed, 99098 passed, 2069 skipped, 776 xfailed, 312 xpassed, 20 errors in 670.87s (0:11:10) = ``` On `pandas_2.0_feature_branch`: ``` = 1584 failed, 98570 passed, 2069 skipped, 776 xfailed, 312 xpassed, 20 errors in 737.24s (0:12:17) = ```
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Deprecate
fill_method
andlimit
inpct_change
APIs (#14277)This PR deprecated `fill_method` and `limit` in `Series.pct_change`, `DataFrame.pct_change` and `Groupby.pct_change` This PR: ``` = 1263 failed, 98996 passed, 2069 skipped, 776 xfailed, 312 xpassed, 20 errors in 701.08s (0:11:41) = ``` On `pandas_2.0_feature_branch`: ``` = 1584 failed, 98570 passed, 2069 skipped, 776 xfailed, 312 xpassed, 20 errors in 737.24s (0:12:17) = ```
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Replace PandasArray with NumpyExtensionArray (#14549)
This PR replaces usages of `PandasArray` with `NumpyExtensionArray` to not have warnings during runtime. On `pandas_2.0_feature_branch`: ``` = 15895 failed, 61649 passed, 1840 skipped, 735 xfailed, 312 xpassed, 371 errors in 4361.35s (1:12:41) = ``` On this PR: ``` = 923 failed, 100684 passed, 2071 skipped, 786 xfailed, 312 xpassed, 20 errors in 1216.98s (0:20:16) = ```
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Fix copy creation of a columnAccessor (#14551)
This PR fixes a copy creation in ColumnAccessor by properly passing the rangeindex and label_dtype to it's newly constructed object.
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This PR removes nullable=True in two pytests as we error when nullable is passed when there is decimal / list / struct data.
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Fix name in Index.difference (#14556)
This PR fixes result names for Index.difference in some early exit scenarios.
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Filter deprecation warning in
ffill
andbfill
APIs (#14554)This PR doesn't let the fillna warnings propagate to the user when ffill and bfill APIs are invoked.
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Fix typo in value_counts (#14550)
This PR fixes the return type of Series.value_counts to return int64, correcting a typo that was int34.
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Enforce
Index.to_frame
deprecations (#14553)This PR enforces deprecations of Index.to_frame and updates pytests related to this API.
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Deprecate DataFrame.applymap and use map instead (#14579)
Pandas 2.1.0 deprecated DataFrame.applymap, This PR deprecated applymap and introduces map to be used as the new alternative API.
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Deprecate first and last (#14583)
This PR deprecates first and last APIs to bring parity with pandas, where these APIs were deprecated starting 2.1.0
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Fix CategoricalDtype docstring (#14622)
This PR fixes the docstring in CategoricalDtype where the repr has added a new field (categories_dtype). This PR fixes 2 doctest failures.
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Fix
DataFrame.sort_index
when a index is aMultiIndex
(#14621)This PR fixes sorting of a MultiIndex by removing an existing hard-coded na_position value that was based on ascending flag, essentially ignoring the user-passed parameter. On pandas_2.0_feature_branch: = 501 failed, 101106 passed, 2071 skipped, 786 xfailed, 312 xpassed, 20 errors in 1234.91s (0:20:34) = This PR: = 405 failed, 101034 passed, 2071 skipped, 954 xfailed, 312 xpassed, 20 errors in 1124.69s (0:18:44) =
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Deprecate reading literal string in cudf.read_json (#14619)
This PR deprecates reading literal strings in read_json, instead users will need to pass StringIO for these cases to silence the warning. This change is to match: pandas-dev/pandas#53409 On pandas_2.0_feature_branch: = 501 failed, 101106 passed, 2071 skipped, 786 xfailed, 312 xpassed, 20 errors in 1234.91s (0:20:34) = This PR: = 426 failed, 101181 passed, 2091 skipped, 786 xfailed, 312 xpassed in 1126.93s (0:18:46) =
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Preserve column ordering in DataFrame.stack (#14626)
This PR preserves original column ordering in DataFrame.stack On pandas_2.0_feature_branch: = 328 failed, 101111 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1113.40s (0:18:33) = This PR: = 316 failed, 101123 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1123.65s (0:18:43) =
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Change
is_.._dtype
deprecations toDeprecationWarning
instead of ……`FutureWarning` (#14617) This PR changes all FutureWarning's to DeprecationWarning's to match with pandas: pandas-dev/pandas#55703 On pandas_2.0_feature_branch: = 501 failed, 101106 passed, 2071 skipped, 786 xfailed, 312 xpassed, 20 errors in 1234.91s (0:20:34) = This PR: = 445 failed, 101162 passed, 2071 skipped, 786 xfailed, 312 xpassed, 20 errors in 1216.79s (0:20:16) =
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Version dataframe.mode pytest (#14650)
This PR versions the xfail properly to not fail in version of pandas where this bug is fixed.
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Filter ufunc related warnings in pytests (#14652)
This PR ignores ufunc runtime warnings that show up in eval API and setitem deprecation warnings. On pandas_2.0_feature_branch: = 260 failed, 101179 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1104.58s (0:18:24) = This PR: = 211 failed, 101228 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1095.49s (0:18:15) =
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Deprecate positional access for label based indexes in Series.__getit…
…em__ (#14654) This PR deprecates positional access in `Series.__getitem__` when a label-based index is present. xref: pandas-dev/pandas#53201 On `pandas_2.0_feature_branch`: ``` = 260 failed, 101179 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1104.58s (0:18:24) = ``` This PR: ``` = 248 failed, 101190 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1105.78s (0:18:25) = ```
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Deprecate
method
ininterpolate
and calculation onobject
dtype (……#14667) This PR: - [x] Deprecates `method` in `interpolate`. - [x] Deprecates performing `interpolate` on string columns. On `pandas_2.0_feature_branch`: ``` = 198 failed, 101241 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1098.81s (0:18:18) = ``` This PR: ``` = 187 failed, 101252 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1090.48s (0:18:10) = ```
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Add more validation to MultiIndex.to_frame (#14671)
This PR adds validation to `name` inputs in `MultiIndex.to_frame` API. On `pandas_2.0_feature_branch`: ``` = 198 failed, 101241 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1098.81s (0:18:18) = ``` This PR: ``` = 180 failed, 101247 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1025.07s (0:17:05) = ```
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Deprecate ignoring empty objects in concat (#14672)
This PR deprecates ignoring `empty` objects for dtype calculation in `concat`. On `pandas_2.0_feature_branch`: ``` = 198 failed, 101241 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1098.81s (0:18:18) = ``` This PR: ``` = 179 failed, 101260 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1225.23s (0:20:25) = ``` ## Checklist - [x] I am familiar with the [Contributing Guidelines](https://github.com/rapidsai/cudf/blob/HEAD/CONTRIBUTING.md). - [x] New or existing tests cover these changes. - [x] The documentation is up to date with these changes.
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Deprecate setting of incompatible dtypes to an existing column (#14668)
This PR deprecates the setting of a value that is not of same dtype as that of a column. On `pandas_2.0_feature_branch`: ``` = 198 failed, 101241 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1098.81s (0:18:18) = ``` This PR: ``` = 176 failed, 101263 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1096.08s (0:18:16) = ```
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Fix datetime related assertions and warnings in pytests (#14673)
This PR fixes all `datetime` related pytests by properly handling their assertions with bug-fixes made in pandas-2.x and filtering newly introduced warnings where not necessary to propagate to the end-user. On `pandas_2.0_feature_branch`: ``` = 198 failed, 101241 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1098.81s (0:18:18) = ``` This PR: ``` = 161 failed, 101280 passed, 2091 skipped, 952 xfailed, 312 xpassed in 1106.29s (0:18:26) = ```
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Fix pytest condition to include more warning scenarios (#14680)
This PR fixes calculation of cond variable in test_corr1d which will include more cases for warnings. This change fixes, 9 pytest failures.
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Sort
Index.difference
&union
results for early exit scenarios (#……14681) This PR sorts results in `Index.difference` & `union` in the early exit scenarios similar to: pandas-dev/pandas#51346 On `pandas_2.0_feature_branch`: ``` = 110 failed, 101331 passed, 2091 skipped, 952 xfailed, 312 xpassed in 1064.30s (0:17:44) = ``` This PR: ``` = 87 failed, 101354 passed, 2091 skipped, 952 xfailed, 312 xpassed in 1004.34s (0:16:44) = ```
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Fix column parameter handling in
read_orc
(#14666)When `columns=[]` for `read_orc`, pandas actually only drops the column and preserves the `index` while reading an orc file. Fixing the `cudf` behavior to match the same. On `pandas_2.0_feature_branch`: ``` = 198 failed, 101241 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1098.81s (0:18:18) = ``` This PR: ``` = 185 failed, 101254 passed, 2091 skipped, 954 xfailed, 312 xpassed in 1088.47s (0:18:08) = ```
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Handle missing warning assertions for concat pytests (#14682)
This PR adds warning assertions that were missed in #14672 On `pandas_2.0_feature_branch`: ``` = 110 failed, 101331 passed, 2091 skipped, 952 xfailed, 312 xpassed in 1064.30s (0:17:44) = ``` This PR: ``` = 105 failed, 101336 passed, 2091 skipped, 952 xfailed, 312 xpassed in 1068.90s (0:17:48) = ```
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Fix a typo error in where pytest (#14683)
This PR fixes a typo in isinstance check, thus fixing 6 pytest failures.
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Change empty column dtype to
string
fromfloat64
(#14691)This PR enforces deprecation where an empty column now defaults to `str` dtype rather than `float64` dtype. On `pandas_2.0_feature_branch`: ``` = 68 failed, 101373 passed, 2091 skipped, 952 xfailed, 312 xpassed in 1000.21s (0:16:40) = ``` This PR: ``` = 65 failed, 101364 passed, 2091 skipped, 964 xfailed, 312 xpassed in 1054.55s (0:17:34) = ```
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Preserve empty index types in parquet reader (#14818)
This PR preserves types of empty column index objects whose metadata is already present in the parquet file. This PR: = 107 failed, 101869 passed, 2091 skipped, 976 xfailed, 312 xpassed in 1265.57s (0:21:05) = On pandas_2.0_feature_branch: = 111 failed, 101865 passed, 2091 skipped, 976 xfailed, 312 xpassed in 1292.26s (0:21:32) =
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Fix
Dataframe.agg
to not return incorrect dtypes (#14851)This PR fixes `DataFrame.agg` API where the actual dataframe was being casted to incorrect dtype (object dtype) and then the operations were being performed. This PR adds strict checks at two places. This PR: ``` = 95 failed, 101829 passed, 2091 skipped, 976 xfailed, 312 xpassed in 1479.83s (0:24:39) = ``` On `pandas_2.0_feature_branch`: ``` = 111 failed, 101865 passed, 2091 skipped, 976 xfailed, 312 xpassed in 1265.57s (0:21:05) = ```
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Catch warnings in reductions (#14852)
This PR validates the warnings generated by certain reduction ops.
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Catch groupby jit apply warnings (#14858)
This PR catches `RuntimeWarning`'s in jit groupby pytests. This PR: ``` = 61 failed, 101866 passed, 2091 skipped, 976 xfailed, 312 xpassed in 1446.19s (0:24:06) = ``` On `pandas_2.0_feature_branch`: ``` = 91 failed, 101836 passed, 2091 skipped, 976 xfailed, 312 xpassed in 1348.36s (0:22:28) = ```
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Fix all reduction pytest failures (#14869)
This PR fixes all the remaining one-off reduction pytest failures. This PR: ``` = 54 failed, 101872 passed, 2091 skipped, 977 xfailed, 312 xpassed in 1432.99s (0:23:52) = ``` On `pandas_2.0_feature_branch`: ``` = 61 failed, 101866 passed, 2091 skipped, 976 xfailed, 312 xpassed in 1446.19s (0:24:06) = ```
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Support kurt/skew(axis=None) for multi columns/low row count (#14874)
closes #14866 @galipremsagar it appears the linked failing test in the issue test_reductions_axis_none_warning expected FutureWarning from these calls. Should they be expected for kurt/skew too?
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Preserve columns dtype in dataframe constructor (#14878)
This PR preserves columns dtype in DataFrame constructor. This PR: = 52 failed, 101872 passed, 2091 skipped, 977 xfailed, 312 xpassed in 1188.72s (0:19:48) = On pandas_2.0_feature_branch: = 61 failed, 101866 passed, 2091 skipped, 976 xfailed, 312 xpassed in 1446.19s (0:24:06) =
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Merge pull request #14890 from vyasr/feat/enable_ci
Enable CI in pandas 2.0 branch
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Merge remote-tracking branch 'upstream/pandas_2.0_feature_branch' int…
…o deps/numpy/unpin
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FIx more miscellaneous pytests failures (#14895)
This PR fixes multiple issues: Enables corr and cov for Datetime and Timedelta types. Properly disables all and any for StringColumn. Preserves groupby categorical index ordering. Catches FutureWarnings in pytests.
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np.product call I think will be redundant with the existing params, np.var call adjusted to what was tested before matmul failure existed upstream in pandas Snuck in a clean up files leftover by a parquet test (found these leftover when running the test suite locally)
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Align datetimeindex slicing behaviour with Pandas 2.x (#14887)
* Align with pandas slicing behaviour for non-monotonic datetime index * Not a TODO --------- Co-authored-by: Ashwin Srinath <shwina@users.noreply.github.com>
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Parquet Writer: Write
non-string
columns pandas-compatibility mode ……only (#14899) This PR enables writing of non-string columns in parquet writer only in pandas-compatibility mode. This PR: ``` = 8 failed, 102249 passed, 2090 skipped, 976 xfailed, 312 xpassed in 1363.59s (0:22:43) = ``` On `pandas_2.0_feature_branch`: ``` = 9 failed, 102247 passed, 2091 skipped, 976 xfailed, 312 xpassed in 1336.47s (0:22:16) = ``` Co-authored-by: Lawrence Mitchell <wence@gmx.li> --------- Co-authored-by: Lawrence Mitchell <wence@gmx.li>
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Merge remote-tracking branch 'upstream/pandas_2.0_feature_branch' int…
…o deps/numpy/unpin
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Merge pull request #14900 from galipremsagar/replace_deprecations
Deprecate `method` in `replace` and warn for a specific combination of `value` and `to_replace`
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Merge pull request #14892 from mroeschke/deps/numpy/unpin
Unpin numpy<1.25
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Merge pull request #14903 from vyasr/fix/revert_incorrect_set_usage
Fix incorrect set usage
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Remove pandas Index subclasses in cudf pandas (#14902)
We won't have to proxy these types anymore since they are removed in pandas 2.0 Also removed references to the cudf Index subclasses that are removed in this branch Authors: - Matthew Roeschke (https://github.com/mroeschke) Approvers: - Ashwin Srinath (https://github.com/shwina) URL: #14902
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Allow
any
andall
only for all-NA
and empty string columns (#14898) This PR allows any and all for all-NA string columns and string columns that have size 0. This is an essential workaround for time-being because any and all aren't natively supported for string types in libcudf and without these workarounds, multiple places in the reduction APIs will need if/elif checks which will make it harder to maintain. This PR: = 5 failed, 102252 passed, 2090 skipped, 976 xfailed, 312 xpassed in 1375.59s (0:22:55) = On pandas_2.0_feature_branch: = 9 failed, 102247 passed, 2091 skipped, 976 xfailed, 312 xpassed in 1336.47s (0:22:16) =
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Prevent converting strings to arrow strings in
dask_cudf
pytests (#……14914) dask is natively converting all object types to arrow[string] types if proper pyarrow dependency is detected. This is being done in assert_eq API. We will need a change in cudf and dask upstream to be able to support this kind of conversion. I'm coming up with a solution in 24.04 dev cycle, but in the interest of shipping pandas-2.x I'm feeling confident to disable this auto-conversion by setting the dataframe.convert-string dask config to False where necessary.
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Fix style issues in 2.0 feature branch (#14918)
This PR fixes all style issues in pandas-2.0 feature branch
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This removes xpassing tests from the test output.
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Add
Groupby.indices
property and deprecateobj
inget_group
(#1……4912) This PR: Introduces Groupby.indices property. Deprecates obj in Groupby.get_group
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Change pandas version range (#14919)
This PR pins pandas version range from 2.0 through 2.1.4
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Fix custreamz pytests to test on float64 types (#14925)
This PR passes types to empty dataframe construction because reductions were being performed on float64 types and now empty column default type is object.
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Remove pandas 1.3, 1.4 checks (#14927)
Removes pandas 1.3, 1.4 checks in unit tests Authors: - Matthew Roeschke (https://github.com/mroeschke) Approvers: - GALI PREM SAGAR (https://github.com/galipremsagar) - Bradley Dice (https://github.com/bdice) URL: #14927
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Apply suggestions from code review
Co-authored-by: Bradley Dice <bdice@bradleydice.com> Co-authored-by: Vyas Ramasubramani <vyasr@nvidia.com>
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Allow hash_array to be findable in pandas 2.0; add workaround for tes…
…t_resample for cudf.pandas (#14908) Fixes new failure in test_hash_array. Open to feedback on a better approach. The main issue is that some public methods are defined under __getattr__ with no __dir__ to find them (which we rely on for module population)
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Remove pandas 1.5 checks (#14928)
Remove pandas 1.5 checks mostly in unit tests.
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Fix custreamz pytests to test on float64 types (#14934)
This PR passes types to empty dataframe construction because reductions were being performed on float64 types and now empty column default type is object.
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Revert "Add back reftarget change for cudf.Index"
This reverts commit 71d87d5.
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Revert "Move isnull (alias) to IndexedFrame"
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Revert "Move notnull (alias) to IndexedFrame"
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Merge pull request #14937 from vyasr/fix/doc_errors
Fix documentation builds with pandas 2 changes
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