Ruff fixes

[janosh]

47b91eb fix ruff SIM300 Yoda asserts
2d8571f fix ruff F841 local var assigned but never used
6c278aa fix ruff SIM113 use enumerate() for index variable
c9d67d9 fix ruff RUF021 parenthesize a and b when chaining and and or together
386b969 fix likely unintentional operator precedence in LobsterEnv._find_relevant_atoms_additional_condition()
b60e68a fix ruff E226 missing whitespace around arithmetic op
882452e fix super.init() call missing parens

[Zhuoying]

Hi @janosh, I found some bugs on Ruff when it recently upgraded to 0.1.14.
When I firstly run ruff format --check . locally, it has the warning of "The following rules may cause conflicts when used with the formatter: ISC001."
Thus I added the conflict formatter ISC001 into pyproject.toml ignore configuration,
https://github.com/Zhuoying/pymatgen/blob/90700f92adcdd74137565f3ed1088a00004c44af/pyproject.toml#L80
https://github.com/Zhuoying/pymatgen/blob/90700f92adcdd74137565f3ed1088a00004c44af/pyproject.toml#L88
then the warning disappear but still with the error below:

Any idea on this? Thanks~

[janosh]

exit code 1 means the file you were editing needs formatting changes. i think we can ignore the warning about ISC001 but either way, it's independent from the exit code you're getting