Update doctests that were not being run until a recent pytest bugfix (#…

…2332)

* Reorganize docs/conf.py to put extensions first

* Update pinned requirements

* Update values in doctests

docs/conf.py

@@ -28,6 +28,43 @@
 from plasmapy import __version__ as release
 
 # -- General configuration ------------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+
+needs_sphinx = "6.1.3"
+
+# Add Sphinx extension module names here. When extensions are removed or
+# added, please update the corresponding section in docs/doc_guide.rst.
+
+extensions = [
+    "hoverxref.extension",
+    "IPython.sphinxext.ipython_console_highlighting",
+    "nbsphinx",
+    "notfound.extension",
+    "plasmapy_sphinx",
+    "sphinx.ext.autodoc",
+    "sphinx.ext.duration",
+    "sphinx.ext.extlinks",
+    "sphinx.ext.graphviz",
+    "sphinx.ext.intersphinx",
+    "sphinx.ext.mathjax",
+    "sphinx.ext.napoleon",
+    "sphinx.ext.todo",
+    "sphinx.ext.viewcode",
+    "sphinx_changelog",
+    "sphinx_codeautolink",
+    "sphinx_copybutton",
+    "sphinx_gallery.load_style",
+    "sphinx_issues",
+    "sphinx_reredirects",
+    "sphinx_tabs.tabs",
+    "sphinx_toolbox.collapse",
+    "sphinxcontrib.bibtex",
+    "sphinxcontrib.globalsubs",
+]
+
+# plasmapy_sphinx settings
+
 autosummary_generate = True
 automodapi_custom_groups = {
     "aliases": {
@@ -77,42 +114,6 @@
     "variables",
 )
 
-# If your documentation needs a minimal Sphinx version, state it here.
-
-needs_sphinx = "6.1.3"
-
-# Add any Sphinx extension module names here, as strings. They can be
-# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
-# ones. When extensions are removed or added, please update the section
-# in docs/doc_guide.rst on Sphinx extensions.
-
-extensions = [
-    "hoverxref.extension",
-    "IPython.sphinxext.ipython_console_highlighting",
-    "nbsphinx",
-    "notfound.extension",
-    "plasmapy_sphinx",
-    "sphinx.ext.autodoc",
-    "sphinx.ext.duration",
-    "sphinx.ext.extlinks",
-    "sphinx.ext.graphviz",
-    "sphinx.ext.intersphinx",
-    "sphinx.ext.mathjax",
-    "sphinx.ext.napoleon",
-    "sphinx.ext.todo",
-    "sphinx.ext.viewcode",
-    "sphinx_changelog",
-    "sphinx_codeautolink",
-    "sphinx_copybutton",
-    "sphinx_gallery.load_style",
-    "sphinx_issues",
-    "sphinx_reredirects",
-    "sphinx_tabs.tabs",
-    "sphinx_toolbox.collapse",
-    "sphinxcontrib.bibtex",
-    "sphinxcontrib.globalsubs",
-]
-
 # Configure sphinxcontrib-bibtex
 
 bibtex_bibfiles = ["bibliography.bib"]

plasmapy/formulary/collisions/frequencies.py

@@ -519,7 +519,7 @@ def Maxwellian_avg_ei_collision_freq(self):
         ...     "e-", "Na+", v_drift=v_drift, n_a=n_a, T_a=T_a, n_b=n_b, T_b=T_b, Coulomb_log=Coulomb_log
         ... )
         >>> electron_ion_collisions.Maxwellian_avg_ei_collision_freq
-        <Quantity 2906316911556553.5 Hz>
+        <Quantity 2.8053078...e+15 Hz>
         """
 
         if not self.test_particle.is_electron or not self.field_particle.is_ion:
@@ -576,7 +576,7 @@ def Maxwellian_avg_ii_collision_freq(self):
         ...     "Na+", "Na+", v_drift=v_drift, n_a=n_a, T_a=T_a, n_b=n_b, T_b=T_b, Coulomb_log=Coulomb_log
         ... )
         >>> ion_ion_collisions.Maxwellian_avg_ii_collision_freq
-        <Quantity 79364412.21510696 Hz>
+        <Quantity 1.1223822...e+08 Hz>
         """
 
         if not self.test_particle.is_ion or not self.field_particle.is_ion:

requirements.txt

@@ -20,7 +20,7 @@ arrow==1.2.3
     # via isoduration
 asteval==0.9.31
     # via lmfit
-astropy==5.3.2
+astropy==5.3.3
     # via plasmapy (setup.py)
 asttokens==2.4.0
     # via stack-data
@@ -76,7 +76,7 @@ cssutils==2.7.1
     # via dict2css
 cycler==0.11.0
     # via matplotlib
-debugpy==1.6.7.post1
+debugpy==1.7.0
     # via ipykernel
 decorator==5.1.1
     # via ipython
@@ -346,7 +346,7 @@ pyparsing==3.0.9
     # via matplotlib
 pyproject-api==1.6.1
     # via tox
-pytest==7.4.1
+pytest==7.4.2
     # via
     #   plasmapy (setup.py)
     #   pytest-datadir