presto-cwl

CWL pipeline for presto

This is a CWL version of the workflow described in the PRESTO tutotial:

http://www.cv.nrao.edu/~sransom/PRESTO_search_tutorial.pdf

Note that this project is still very much in alpha stage and very much in flux.

requirements

• A CWL runner (like CWLtool)
• Docker or Singularity if you want to use containers

running

To run the pipeline with the example dataset just run:

$ make run

Please examine the Makefile for other targets. There are many examples in there showing how to use the pipeline using Toil, singularity, Docker and uDocker.