run_tests.py

#!/usr/bin/env python3
# coding: utf-8
# /*##########################################################################
#
# Copyright (C) 2015-2018 European Synchrotron Radiation Facility
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
#
# ###########################################################################*/
"""Run the tests of the project.

This script expects a suite function in <project_package>.test,
which returns a unittest.TestSuite.

Test coverage dependencies: coverage, lxml.
"""

__authors__ = ["Jérôme Kieffer", "Thomas Vincent"]
__date__ = "27/12/2022"
__license__ = "MIT"

import sys
import logging
import os
from argparse import ArgumentParser
import subprocess
import time
import unittest
import collections
import tomli
import tempfile

class StreamHandlerUnittestReady(logging.StreamHandler):
    """The unittest class TestResult redefine sys.stdout/err to capture
    stdout/err from tests and to display them only when a test fail.
    This class allow to use unittest stdout-capture by using the last sys.stdout
    and not a cached one.
    """

    def emit(self, record):
        """
        :type record: logging.LogRecord
        """
        self.stream = sys.stderr
        super(StreamHandlerUnittestReady, self).emit(record)

    def flush(self):
        pass


def createBasicHandler():
    """Create the handler using the basic configuration"""
    hdlr = StreamHandlerUnittestReady()
    fs = logging.BASIC_FORMAT
    dfs = None
    fmt = logging.Formatter(fs, dfs)
    hdlr.setFormatter(fmt)
    return hdlr


# Use an handler compatible with unittests, else use_buffer is not working
logging.root.addHandler(createBasicHandler())

# Capture all default warnings
logging.captureWarnings(True)
import warnings
warnings.simplefilter('default')

logger = logging.getLogger("run_tests")
logger.setLevel(logging.WARNING)

logger.info("Python %s %s", sys.version, tuple.__itemsize__ * 8)
if sys.version_info.major < 3:
    logger.error("pyFAI no more support Python2")

try:
    import resource
except ImportError:
    resource = None
    logger.warning("resource module missing")

try:
    import importlib
    importer = importlib.import_module
except ImportError:

    def importer(name):
        module = __import__(name)
        # returns the leaf module, instead of the root module
        subnames = name.split(".")
        subnames.pop(0)
        for subname in subnames:
            module = getattr(module, subname)
            return module

try:
    import numpy
except Exception as error:
    logger.warning("Numpy missing: %s", error)
else:
    logger.info("Numpy %s", numpy.version.version)

try:
    import scipy
except ImportError:
    logger.warning("Scipy missing")
else:
    logger.info("Scipy %s from %s", scipy.version.version, scipy.__path__)

try:
    import fabio
except ImportError:
    logger.warning("FabIO missing")
else:
    logger.info("FabIO %s", fabio.version)

try:
    import h5py
except Exception as error:
    logger.warning("h5py missing: %s", error)
else:
    logger.info("h5py %s", h5py.version.version)

try:
    import Cython
except ImportError:
    logger.warning("Cython missing")
else:
    logger.info("Cython %s", Cython.__version__)

PROJECT_DIR = os.path.dirname(os.path.abspath(__file__))
from bootstrap import get_project_name, build_project
PROJECT_NAME = get_project_name(PROJECT_DIR)
logger.info("Project name: %s", PROJECT_NAME)


class TextTestResultWithSkipList(unittest.TextTestResult):
    """Override default TextTestResult to display list of skipped tests at the
    end
    """

    def printErrors(self):
        unittest.TextTestResult.printErrors(self)
        # Print skipped tests at the end
        self.printGroupedList("SKIPPED", self.skipped)

    def printGroupedList(self, flavour, errors):
        grouped = collections.OrderedDict()

        for test, err in errors:
            if err in grouped:
                grouped[err] = grouped[err] + [test]
            else:
                grouped[err] = [test]

        for err, tests in grouped.items():
            self.stream.writeln(self.separator1)
            for test in tests:
                self.stream.writeln("%s: %s" % (flavour, self.getDescription(test)))
            self.stream.writeln(self.separator2)
            self.stream.writeln("%s" % err)


class ProfileTextTestResult(unittest.TextTestRunner.resultclass):

    def __init__(self, *arg, **kwarg):
        unittest.TextTestRunner.resultclass.__init__(self, *arg, **kwarg)
        self.logger = logging.getLogger("memProf")
        self.logger.setLevel(min(logging.INFO, logging.root.level))
        self.logger.handlers.append(logging.FileHandler("profile.log"))

    def startTest(self, test):
        unittest.TextTestRunner.resultclass.startTest(self, test)
        if resource:
            self.__mem_start = \
                resource.getrusage(resource.RUSAGE_SELF).ru_maxrss
        self.__time_start = time.perf_counter()

    def stopTest(self, test):
        unittest.TextTestRunner.resultclass.stopTest(self, test)
        # see issue 311. For other platform, get size of ru_maxrss in "man getrusage"
        if sys.platform == "darwin":
            ratio = 1e-6
        else:
            ratio = 1e-3
        if resource:
            memusage = (resource.getrusage(resource.RUSAGE_SELF).ru_maxrss -
                        self.__mem_start) * ratio
        else:
            memusage = 0
        self.logger.info("Time: %.3fs \t RAM: %.3f Mb\t%s",
                         time.perf_counter() - self.__time_start,
                         memusage, test.id())


def report_uncovered_files(cov, build_dir, inject_xml=None):
    """
    Generate a report of all modules uncovered by the tests

    :param cov: test coverage instance
    :param str build_dir: Build directory
    :return: Text report
    """
    if build_dir.endswith("pyFAI"):
        build_dir = os.path.dirname(build_dir)
    import fnmatch

    existing_files = []
    for root, _dirnames, filenames in os.walk(PROJECT_NAME):
        for filename in fnmatch.filter(filenames, '*.py'):
            existing_files.append(os.path.join(root, filename))
    existing_files = filter(lambda x: not x.endswith("/setup.py"), existing_files)
    existing_files = filter(lambda x: "/test/" not in x, existing_files)
    existing_files = filter(lambda x: "/third_party/" not in x, existing_files)

    if inject_xml is None:
        fd, fn = tempfile.mkstemp(suffix=".xml")
        os.close(fd)
        cov.xml_report(outfile=fn)
    else:
        fn = inject_xml
    from lxml import etree
    xml = etree.parse(fn)
    classes = xml.xpath("//class")

    build_dir = os.path.abspath(build_dir)

    covered_files = []

    for cl in classes:
        filename = cl.get("filename")
        filename = os.path.abspath(filename)
        if filename.startswith(build_dir):
            filename = filename[len(build_dir) + 1:]
            covered_files.append(filename)

    uncovered_files = set(existing_files) - set(covered_files)
    uncovered_files = sorted(list(uncovered_files))
    text = ""
    text += "Uncovered files (%d)\n" % len(uncovered_files)
    text += "-" * (len(text) - 1) + "\n"
    for filename in uncovered_files:
        text += "* %s\n" % filename

    return text


def report_rst(cov, package, version="0.0.0", base="", inject_xml=None):
    """
    Generate a report of test coverage in RST (for Sphinx inclusion)

    :param cov: test coverage instance
    :param str package: Name of the package
    :param str base: base directory of modules to include in the report
    :return: RST string
    """
    if inject_xml is None:
        fd, fn = tempfile.mkstemp(suffix=".xml")
        os.close(fd)
        cov.xml_report(outfile=fn)
    else:
        fn = inject_xml
    from lxml import etree
    xml = etree.parse(fn)
    classes = xml.xpath("//class")

    line0 = "Test coverage report for %s" % package
    res = [line0, "=" * len(line0), ""]
    res.append("Measured on *%s* version %s, %s" %
               (package, version, time.strftime("%d/%m/%Y")))
    res += ["",
            ".. csv-table:: Test suite coverage",
            '   :header: "Name", "Stmts", "Exec", "Cover"',
            '   :widths: 35, 8, 8, 8',
            '']
    tot_sum_lines = 0
    tot_sum_hits = 0

    for cl in classes:
        name = cl.get("name")
        fname = cl.get("filename")
        if os.path.abspath(fname).startswith(base):
            lines = cl.find("lines").getchildren()
            hits = [int(i.get("hits")) for i in lines]

            sum_hits = sum(hits)
            sum_lines = len(lines)

            cover = 100.0 * sum_hits / sum_lines if sum_lines else 0

            if base:
                name = os.path.relpath(fname, base)

            res.append('   "%s", "%s", "%s", "%.1f %%"' %
                       (name, sum_lines, sum_hits, cover))
            tot_sum_lines += sum_lines
            tot_sum_hits += sum_hits
    res.append("")
    res.append('   "%s total", "%s", "%s", "%.1f %%"' %
               (package, tot_sum_lines, tot_sum_hits,
                100.0 * tot_sum_hits / tot_sum_lines if tot_sum_lines else 0))
    res.append("")
    return os.linesep.join(res)


def is_debug_python():
    """Returns true if the Python interpreter is in debug mode."""
    try:
        import sysconfig
    except ImportError:  # pragma nocover
        # Python < 2.7
        import distutils.sysconfig as sysconfig

    if sysconfig.get_config_var("Py_DEBUG"):
        return True

    return hasattr(sys, "gettotalrefcount")


# Prevent importing from source directory
if os.path.dirname(os.path.abspath(__file__)) == os.path.abspath(sys.path[0]):
    removed_from_sys_path = sys.path.pop(0)
    logger.info("Patched sys.path, removed: '%s'", removed_from_sys_path)



def get_test_options(project_module):
    """Returns the test options if available, else None"""
    module_name = project_module.__name__ + '.test.utilstest'
    logger.info('Import %s', module_name)
    try:
        test_utils = importer(module_name)
    except ImportError:
        logger.warning("No module named '%s'. No test options available.", module_name)
        return None

    test_options = getattr(test_utils, "test_options", None)
    return test_options


if "-i" in sys.argv or "--installed" in sys.argv:
    for bad_path in (".", os.getcwd(), PROJECT_DIR):
        if bad_path in sys.path:
            sys.path.remove(bad_path)
    try:
        module = importer(PROJECT_NAME)
    except Exception:
        logger.error("Cannot run tests on installed version: %s not installed or raising error.",
                     PROJECT_NAME)
        raise
    else:
        print("Running tests on system-wide installed project")
else:
    build_dir = build_project(PROJECT_NAME, PROJECT_DIR)
    sys.path.insert(0, build_dir)
    logger.warning("Patched sys.path, added: '%s'", build_dir)
    module = importer(PROJECT_NAME)

epilog = """Environment variables:
WITH_QT_TEST=False to disable graphical tests
PYFAI_OPENCL=False to disable OpenCL tests.
PYFAI_LOW_MEM: set to True to skip all tests >100Mb
WITH_GL_TEST=False to disable tests using OpenGL
"""
parser = ArgumentParser(description='Run the tests.',
                        epilog=epilog)

test_options = get_test_options(module)
"""Contains extra configuration for the tests."""
test_options.add_parser_argument(parser)

default_test_name = f"{PROJECT_NAME}.test.suite"
parser.add_argument("test_name", nargs='*',
                    default=(default_test_name,),
                    help="Test names to run (Default: %s)" % default_test_name)


parser.add_argument("--installed",
                    action="store_true", dest="installed", default=False,
                    help=("Test the installed version instead of" +
                          "building from the source"))
parser.add_argument("-c", "--coverage", dest="coverage",
                    action="store_true", default=False,
                    help=("Report code coverage" +
                          "(requires 'coverage' and 'lxml' module)"))
parser.add_argument("-m", "--memprofile", dest="memprofile",
                    action="store_true", default=False,
                    help="Report memory profiling")
parser.add_argument("-v", "--verbose", default=0,
                    action="count", dest="verbose",
                    help="Increase verbosity. Option -v prints additional " +
                         "INFO messages. Use -vv for full verbosity, " +
                         "including debug messages and test help strings.")
parser.add_argument("--qt-binding", dest="qt_binding", default=None,
                    help="Force using a Qt binding, from 'PyQt4', 'PyQt5', or 'PySide'")


options = parser.parse_args()
sys.argv = [sys.argv[0]]

test_verbosity = 1
use_buffer = True
if options.verbose == 1:
    logging.root.setLevel(logging.INFO)
    logger.info("Set log level: INFO")
    test_verbosity = 2
    use_buffer = False
elif options.verbose > 1:
    logging.root.setLevel(logging.DEBUG)
    logger.info("Set log level: DEBUG")
    test_verbosity = 2
    use_buffer = False

if options.coverage:
    logger.info("Running test-coverage")
    import coverage
    omits = ["*test*", "*third_party*", "*/setup.py",
             # temporary test modules (silx.math.fit.test.test_fitmanager)
             "*customfun.py", ]
    try:
        coverage_class = coverage.Coverage
    except AttributeError:
        coverage_class = coverage.coverage
    print(f"|{PROJECT_NAME}|")
    cov = coverage_class(include=[f"*/{PROJECT_NAME}/*"],
                         omit=omits)
    cov.start()

if options.qt_binding:
    binding = options.qt_binding.lower()
    if binding == "pyqt4":
        logger.info("Force using PyQt4")
        import PyQt4.QtCore  # noqa
    elif binding == "pyqt5":
        logger.info("Force using PyQt5")
        import PyQt5.QtCore  # noqa
    elif binding == "pyside":
        logger.info("Force using PySide")
        import PySide.QtCore  # noqa
    elif binding == "pyside2":
        logger.info("Force using PySide2")
        import PySide2.QtCore  # noqa
    else:
        raise ValueError("Qt binding '%s' is unknown" % options.qt_binding)

PROJECT_VERSION = getattr(module, 'version', '')
PROJECT_PATH = module.__path__[0]


# Run the tests
runnerArgs = {}
runnerArgs["verbosity"] = test_verbosity
runnerArgs["buffer"] = use_buffer
if options.memprofile:
    runnerArgs["resultclass"] = ProfileTextTestResult
else:
    runnerArgs["resultclass"] = TextTestResultWithSkipList
runner = unittest.TextTestRunner(**runnerArgs)

logger.warning("Test %s %s from %s",
               PROJECT_NAME, PROJECT_VERSION, PROJECT_PATH)

test_module_name = PROJECT_NAME + '.test'
logger.info('Import %s', test_module_name)
test_module = importer(test_module_name)

test_suite = unittest.TestSuite()

if test_options is not None:
    print(test_options)
    # Configure the test options according to the command lines and the the environment
    test_options.configure(options)
else:
    logger.warning("No test options available.")

if not options.test_name:
    # Do not use test loader to avoid cryptic exception
    # when an error occur during import
    project_test_suite = getattr(test_module, 'suite')
    test_suite.addTest(project_test_suite())
else:
    test_suite.addTest(
        unittest.defaultTestLoader.loadTestsFromNames(options.test_name))

# Display the result when using CTRL-C
unittest.installHandler()

result = runner.run(test_suite)

if result.wasSuccessful():
    exit_status = 0
    import pyFAI.test.utilstest
    pyFAI.test.utilstest.UtilsTest.clean_up()
else:
    exit_status = 1

if options.coverage:
    cov.stop()
    cov.save()
    with open("coverage.rst", "w") as fn:
        fn.write(report_rst(cov, PROJECT_NAME, PROJECT_VERSION, PROJECT_PATH))
    print(cov.report())
    print("")
    print(report_uncovered_files(cov, PROJECT_PATH))

sys.exit(exit_status)