fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
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Updated
Apr 17, 2024 - Nim
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Whole Genome Sequencing analysis, WGS analysis
Call and score variants from WGS/WES of rare disease patients.
Snakemake-based workflow for detecting structural variants in genomic data
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Kourami: Graph-guided assembly for HLA alleles
vSNP -- validate SNPs
Data management of large-scale whole-genome sequence variant calls (Development version only)
Trim, Align to genome, Deduplicate, Realign WGS sequencing samples
A snakemake workflow for WGS-based tuberculosis transmission analysis
Rapid determination of appropriate reference genomes.
A web app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.
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