NGS Processing Pipelines for WGS and WES data
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Updated
Nov 11, 2019 - Python
NGS Processing Pipelines for WGS and WES data
WGS Absence Repository for Frontend Services. Powered by ReactJS with Google oAuth 2.0
A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
Curated lists of features for Mtb genomic analysis
Whole genome sequencing (WGS) was combined with bioinformatics tools to investigate the epidemiology of Vibrio cholerae in the Philippines and in other cholera affected countries.
Joint Genotyping in MIT Fraenkel Lab with ALS Genomics + 1000 Genomes Data
Workflow for biological validation of germline SNP and indel variant datasets.
Converter for Swiss-Coordinates and WGS-Coordinates.
GATK WGS workflow
Bioinformatics tool for Salmonella WGS analysis
A combination of optical genome mapping with Bionano and whole genome sequencing short-read data. This pipeline was created to help integrate structural variant calling from these two technologies.
Supplementary materials for the article entitled: Novel Algorithms for PFGE Bacterial Typing: Number of Co-Migrated DNA Fragments, Linking PFGE to WGS Results and Computer simulations for Evaluation of PulseNet International Typing Protocols
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