First steps to Bioinformatics by using Biopython tutorial documentation
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Updated
Jun 12, 2024 - Jupyter Notebook
First steps to Bioinformatics by using Biopython tutorial documentation
Infectious Disease Sequencing Platform
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
Data intensive science for everyone.
Official code repository for GATK versions 4 and up
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
UGENE is free open-source cross-platform bioinformatics software
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
biocommons website
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Various components for building RNA sequencing applications in Perl
Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.
Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Standardized JSON Schema for authoring multi-mission sequences.
A set of Pure Data abstractions, including sequencers, GUIs, and other utilities.
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
Add a description, image, and links to the sequencing topic page so that developers can more easily learn about it.
To associate your repository with the sequencing topic, visit your repo's landing page and select "manage topics."