feat(reporter): Replace javax usages by jakarta in the Jira REST client

When JakartaEE 9 was released in 2020 ([1]), the packages "javax.*" were
migrated to "jakarta.*" ([2]). Unfortunately, the Jira REST client is still
using the old package names despite an existing ticket ([3)].
This causes problem when integrating ORT in other products at this can
create classpath clashes between incompatible JavaEE library versions.
This commit fixes this behavior by using a Gradle plugin to transform the
Jira REST client dependency to make it use the new package "jakarta"
instead ([4]).
Consequently, the old dependency "jakarta.ws.rs:jakarta.ws.rs-api:2.1.6"
can be removed. As a tradeoff, the dependency "jersy-common" needs to be
added instead to avoid running in another runtime error ([5]).

[1]: https://jakarta.ee/news/jakarta-ee-9-released/
[2]: https://dev.to/tbroyer/the-javax-jakarta-mess-and-a-gradle-solution-3c44
[3]: https://ecosystem.atlassian.net/browse/JRJC-262
[4]: https://github.com/nebula-plugins/gradle-jakartaee-migration-plugin
[5]: https://stackoverflow.com/a/76392371/5321324

Signed-off-by: Nicolas Nobelis <nicolas.nobelis@bosch.com>

Author: nnobelis

gradle/libs.versions.toml

@@ -6,6 +6,7 @@ downloadPlugin = "5.6.0"
 gitSemverPlugin = "0.15.0"
 graalVmNativeImagePlugin = "0.10.5"
 ideaExtPlugin = "1.1.10"
+jakartaMigrationPlugin = "0.24.0"
 kotlinPlugin = "2.1.10"
 ksp = "2.1.10-1.0.30"
 mavenPublishPlugin = "0.30.0"
@@ -32,7 +33,7 @@ hikari = "6.2.1"
 hoplite = "2.9.0"
 jackson = "2.18.2"
 jakartaMail = "2.0.1"
-jakartaRestApi = "2.1.6"
+jerseyCommon = "3.1.10"
 jgit = "7.1.0.202411261347-r"
 jiraRestClient = "6.0.1"
 jruby = "9.4.12.0"
@@ -74,6 +75,7 @@ xz = "1.10"
 download = { id = "de.undercouch.download", version.ref = "downloadPlugin" }
 gitSemver = { id = "com.github.jmongard.git-semver-plugin", version.ref = "gitSemverPlugin" }
 ideaExt = { id = "org.jetbrains.gradle.plugin.idea-ext", version.ref = "ideaExtPlugin" }
+jakartaMigration = { id = "com.netflix.nebula.jakartaee-migration", version.ref = "jakartaMigrationPlugin" }
 kotlinSerialization = { id = "org.jetbrains.kotlin.plugin.serialization", version.ref = "kotlinPlugin" }
 versions = { id = "com.github.ben-manes.versions", version.ref = "versionsPlugin" }
 
@@ -122,7 +124,7 @@ jackson-dataformat-yaml = { module = "com.fasterxml.jackson.dataformat:jackson-d
 jackson-datatype-jsr310 = { module = "com.fasterxml.jackson.datatype:jackson-datatype-jsr310", version.ref = "jackson" }
 jackson-module-kotlin = { module = "com.fasterxml.jackson.module:jackson-module-kotlin", version.ref = "jackson" }
 jakartaMail = { module = "com.sun.mail:jakarta.mail", version.ref = "jakartaMail" }
-jakartaRestApi = { module = "jakarta.ws.rs:jakarta.ws.rs-api", version.ref = "jakartaRestApi" }
+jerseyCommon = { module = "org.glassfish.jersey.core:jersey-common", version.ref = "jerseyCommon" }
 jgit = { module = "org.eclipse.jgit:org.eclipse.jgit", version.ref = "jgit" }
 jgit-ssh-apache = { module = "org.eclipse.jgit:org.eclipse.jgit.ssh.apache", version.ref = "jgit" }
 jgit-ssh-apache-agent = { module = "org.eclipse.jgit:org.eclipse.jgit.ssh.apache.agent", version.ref = "jgit" }

notifier/build.gradle.kts

@@ -20,6 +20,14 @@
 plugins {
     // Apply precompiled plugins.
     id("ort-library-conventions")
+
+    // Apply third-party plugins.
+    alias(libs.plugins.jakartaMigration)
+}
+
+jakartaeeMigration {
+    includeTransform("com.atlassian.jira:jira-rest-java-client-core")
+    configurations.filterNot { it.isCanBeDeclared }.forEach(::transform)
 }
 
 dependencies {
@@ -32,16 +40,7 @@ dependencies {
     implementation("org.jetbrains.kotlin:kotlin-scripting-jvm-host")
 
     implementation(libs.jakartaMail)
-
-    // Required due to https://ecosystem.atlassian.net/browse/JRJC-262.
-    implementation(libs.jakartaRestApi)
-
-    constraints {
-        implementation(libs.jakartaRestApi) {
-            because("the JIRA REST client still needs a 2.1.x version with the javax package namespace")
-        }
-    }
-
+    implementation(libs.jerseyCommon)
     implementation(libs.jiraRestClient.api)
     implementation(libs.jiraRestClient.app) {
         exclude("org.apache.logging.log4j", "log4j-slf4j2-impl")