.gitignore

# Prerequisites
*.d

# Compiled Object files
*.slo
*.lo
*.o
*.obj

# Precompiled Headers
*.gch
*.pch

# Compiled Dynamic libraries
*.so
*.dylib
*.dll

# Fortran module files
*.mod
*.smod

# Compiled Static libraries
*.lai
*.la
*.a
*.lib

# Executables
*.exe
*.out
*.app

# PyCharm
.idea/
venv/
__pycache__/

# VS Code
.vscode/

# Project Specific (C++)
bin/
CMakeFiles/
cmake_lib
CMakeCache.txt
CMakeLists.txt
*.cmake

# Protein files
*.pdb
*.fasta
*.aln  # Multiple Sequence Alignment (MSA) files

# Condor error output directory
data/scripts/outerr/

# Data directories
antibody_database/
trained_models/

# Etc.
*.p
*.swp
*.csv
*.tsv
*.txt
*.zip
*.h5
*.pyc
*.png
.ipynb_checkpoints/
trained_models/
ROSETTA_CRASH.log
output_dir/
/scripts/
/data/
dist/
temp/
.DS_Store
lightning_logs/
wandb/
*.egg-info/
training/
preprocessing/