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CIViC bot task to update fusion names to use new delimiter convention #1639

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malachig opened this issue Feb 18, 2022 · 2 comments
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@malachig
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To adhere to new guidelines for naming of RNA fusion variants we would like CIViC bot to propose suggested changes for the attached variants.

variants-2022-02-17.xlsx

For each variant in this spreadsheet (CIViC variant ID in column A), create a new variant alias using the current variant name (column B).

At the same time, propose a change to the variant name where - becomes ::.

For example, fusion variant: ACTB-GLI1 becomes ACTB::GLI1

@malachig malachig added this to Open in v1 Enhancements via automation Feb 18, 2022
@susannasiebert
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susannasiebert commented Feb 18, 2022

CIViC bot should also do a second (separate) suggested change that adds the Sequence ontology term transcript fusion (SO:0001886) as a variant type.

@acoffman
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