thesis.tex

%\includeonly{-}
\documentclass{thesis}
\usepackage{dcolumn}
\usepackage{import}
%\usepackage[top=2cm,bottom=2cm,left=1.5cm,right=1.5cm]{geometry}
\usepackage{feynmp}
\usepackage{afterpage}
\usepackage{graphicx}
\usepackage{pdfpages}
\usepackage{marginnote}
%%\usepackage{dblfloatfix}
%\usepackage{minted}
\usepackage{xspace}
%\usepackage[heightadjust=all,valign=t]{floatrow,fr-subfig}
\usepackage{siunitx}
\usepackage{eval}
%\usepackage{ragged2e}
%\usepackage{array}
\usepackage[printonlyused]{acronym}
\usepackage[strings]{underscore}
\usepackage{babel}
\usepackage[backend=bibtex,sorting=none,backref=true,backrefstyle=two,date=year]{biblatex}
\usepackage{pbox}
%\usepackage{pythontex}
%%\usepackage{amsmath}
%%\usepackage{amssymb}
%\usepackage{xfrac}
%\usepackage{xcolor}
\usepackage{multicol}
\usepackage[sharp]{easylist}
\usepackage{multirow}
\usepackage{listings}
%\usepackage[colorlinks=false]{hyperref}
\usepackage[bookmarks=true,plainpages=false]{hyperref}%
%\usepackage[caption=false]{subfig}
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%\hypersetup{%
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%\makeatletter
%\Hy@AtBeginDocument{%
%  \def\@pdfborder{0 0 1}% Overrides border definition set with colorlinks=true
%  \def\@pdfborderstyle{/S/U/W 0}% Overrides border style set with colorlinks=true
%                                % Hyperlink border style will be underline of width 1pt
%}
%\makeatother

\makeatletter
\@ifpackageloaded{hyperref}{%
\hypersetup{%
pdftitle = {},
pdfsubject = {PhD Thesis for Ben Krikler},
pdfkeywords = {COMET, mu-e conversion, CLFV, physics},
pdfauthor = {\textcopyright\ Ben Krikler},
}
}{}
\makeatother

\input{figs/feynman/fixFeynmpForPdf}
\input{library/definitions}
%\input{figs/figures.tex}

\renewcommand{\textfraction}{0.01}
\renewcommand{\topfraction}{0.9} 
\renewcommand{\bottomfraction}{0.9} 
\renewcommand{\floatpagefraction}{0.7}

%% Define the thesis title and author
\title{Sensitivity and Background\\Estimates for \phaseII of the COMET~Experiment}
\author{Benjamin Edward Krikler}

\addbibresource{library/record.bib}

\begin{document}
\input{key_numbers}

%% Define the un-numbered front matter (cover pages, rubrik and table of contents)
\begin{frontmatter}
  \input{frontmatter}
\end{frontmatter}

%% Start the content body of the thesis
\begin{mainmatter}
  %% Actually, more semantic chapter filenames are better, like "chap-bgtheory.tex"

\include{theory}
\acresetall
\include{mueconv}
\acresetall
\include{detector}
\acresetall
\include{software}
\acresetall
%\include{muon-beam}
%\include{pile-up}
%\include{alcap}
\include{optimisation}
\acresetall
\include{sensitivity}
\acresetall
\include{backgrounds}
\acresetall
\include{appendix-stopTgtImprovements}
\acresetall
\include{summary}
\acresetall

  %% To ignore a specific chapter while working on another,
  %% making the build faster, comment it out like this:
  %\input{chap4}
\end{mainmatter}

%% Produce the un-numbered back matter (e.g. colophon,
%% bibliography, tables of figures etc., index...)
%\begin{backmatter}
  %\input{backmatter}
%\include{simulationConfigurations}
\chapter*{List of Acronyms}
\addcontentsline{toc}{chapter}{List of Acronyms}  
\input{library/acronyms.tex}
%\end{backmatter}

%\bibliographystyle{nature}
%%\bibliographystyle{plain}
%%\bibliographystyle{bensbib}
%%\bibliographystyle{yoshi}
%\bibliography{library/record}
\printbibliography[heading=bibintoc]

% Produce the appendices
\begin{appendices}
\include{figure-permissions}
%\include{appendix-bentSolenoidDrifts}
\include{appendix-antiprotonEndpoint}
\include{appendix-alcap}
\end{appendices}

\end{document}